Today 27/04/2013 I received a formal "PayPal problem" confirmation of the "Missing & wrong IPN history" problems I raised in this ticket!
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Your issue has been assigned to me, firstly please accept my apologies for the delay in response and resolution of this issue.
We are currently working on a fix and will have it deployed ASAP, I will update you once the deploy has occurred. The fix should resolve all displayed errors within the IPN. If you still experience any issue after the fix please let MTS know ASAP.
Once again, sorry for any inconvenience experienced during the issue.
Thank you for patience on this issue.
Sincerely,
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If interested I can send via PM more details about this PayPal ticket.