It'd probably easier to just modify install.comprofiler.php then in cbInstaller_install_plugins find the $newConfig usages. You can adjust the global config, convert to json, and set $newConfig before it does its query storage for custom configuration; there's a couple examples of this within that file and function to also use as examples in your custom solution if you want to make your own installer script.
Kyle (Krileon)
Community Builder Team Member
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